Explore biomolecular pathways in Reactome from the command-line or a Python script

Interpretable multimodal cancer survival prediction from whole slide images and bulk transcriptomics, with prototype-pathway cross-modal attention.

Integration of pathway-related information from Reactome in BEL

A research biochemical network explorer and genetic cytohistological encyclopedia.

A comprehensive bioinformatics pipeline for downloading and analyzing genes associated with specific phenotypes from multiple biological databases. This package provides both R scripts for gene retrieval and Python analysis tools for downstream analysis.

Converting SBGN-encoded pathways to the SIF file format

Converting SBGN encoded pathways to the SIF file format

A polyglot (Python/R/Julia) integration pipeline to transition the MP-BioPath Reactome algorithm into a high-throughput genomic predictive engine.

pathfinder http://reactome.org/ graph binding

Multi-Omics Integration Pipeline with Reactome network mapping, AWS backend (SageMaker · EC2 · API Gateway · DynamoDB), and React frontend

MCP server for the Reactome pathway database — search, lookup, hierarchy traversal, SBML/SBGN export, and gene-set pathway-enrichment analysis for any MCP-capable coding agent.

Predicting whether disease pathways are associated with Alzheimer's disease using data from UniProt, CheBi, KEGG and Reactome.

An AnyWidget component for interactive embedding of Reactome Pathway browsers

Python implementation of a bipartite directed multigraph extracted from the Reactome biological pathway database.

Pipeline bioinformático automatizado para el mapeo, análisis de variantes (GWAS Catalog) y estudio de vías metabólicas (Reactome) compartidas entre TDAH y Altas Capacidades Intelectuales.