A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water
This project includes Needleman-Wunsch and Smith-Waterman algorithms and their afine gap variations (Gotoh) written to work with Cython, PyPy and Numba. Numba JIT shows greater performance. For Best performance use gotoh_jit.py to get only the best score and use gotoh_jit_traceback to get the best alignment
Bioinformatics library
SAM Alignment Reconstructor
Python implementation for DNA trace reconstruction with marker code, MIT licensed
🧬 This project implements the Needleman-Wunsch algorithm for global sequence alignment.
Pipeline to make pairwise comparisons of matched fasta sequences.
Intro to Bioinformatics course contents
This program allows to execute Pairwise alignment of proteins from a MS file.
Projects developed under the Bioinformatics college chair during the 2020/2021 school year
This repository provides implementations for basic sequence alignment techniques, focusing on two popular methods: Dot Plot and Needleman-Wunsch algorithm.
A bioinformatics-driven assessment of Genetically Modified Organism (GMO) status in maize and soyabeans
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