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Summing position and read length exceeds chromosome size?

Status: Open.

#257 In BirolLab/NanoSim;

· IsabelMarleen opened on Jun 11, 2026

Cannot simulate transcriptomic reads with intron retention

Status: Open.

#253 In BirolLab/NanoSim;

· SimonHegele opened on Apr 15, 2026

Mismatch in read quality between input and simulated reads

Status: Open.

#247 In BirolLab/NanoSim;

· ezherman opened on Jul 17, 2025

ValueError: maximum supported dimension for an ndarray is 32, found 400000

Status: Open.

#246 In BirolLab/NanoSim;

· npdungca opened on Jul 13, 2025

Error when FASTQ read headers are too long

bug

enhancement

Status: Open.

#245 In BirolLab/NanoSim;

· AntonS-bio opened on May 6, 2025

Non-zero error rates for perfect reads

question

Status: Open.

#244 In BirolLab/NanoSim;

· SimonHegele opened on Mar 31, 2025

FileNotFoundError: No such file or directory when using pre-trained model

Status: Open.

#243 In BirolLab/NanoSim;

· florenmartino opened on Mar 6, 2025

Metagenomic mode Help with read_analysis.py

Status: Open.

#240 In BirolLab/NanoSim;

· florenmartino opened on Nov 21, 2024

Feature Request: Checking Input-files

enhancement

Status: Open.

#239 In BirolLab/NanoSim;

· SimonHegele opened on Nov 20, 2024

Transcript ID in reference and expression profile do not match

bug

Status: Open.

#237 In BirolLab/NanoSim;

· SimonHegele opened on Oct 30, 2024

How many threads and memories required at training stage?

Status: Open.

#236 In BirolLab/NanoSim;

· yaoxkkkkk opened on Oct 20, 2024

head_vs_ht_ratio = head_vs_ht_ratio_list[each_read] IndexError: list index out of range

Status: Open.

#228 In BirolLab/NanoSim;

· huangxin0221 opened on Sep 29, 2024